BioModME: Biological Modeling Made Easy

Welcome to BioModME’s documentation!

BioSysMod is an application that is meant to streamline building biological computational models. It is an all-in-one tool that allows the user to build a model, solve for its mathematical equations, and plot all relevant features.

First Steps

Are you new to BioModME or computational modeling? This is the place to start!

How the documentation is organized

The documentation is split into the following sections:

Getting Started

Contains all the information on accessing/downloading the application for use.


Explains the specifics of tabs and pages of the application. If you are wondering what a specific option or button does, this is the place to check!

Mathematical Information

This section contains all the mathematical explainations that goes into solving the mathematical differential equations. See how the equations are derived or what a specific equation building option results in.


Great place to start to learn the ins and outs of how to use BioModME. We provide tutorials for multiple model types and tutorials on how to use some of the more tricky features of the application.