BioModME
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Getting Started

  • Accessing BioModME

Technical Information

  • Mathematical Derivations
  • ODE Solvers
  • Parameter Estimation
  • Units

Tutorials:

  • Basic Tutorial
    • Constructing Model
      • Define Variables
      • Create Reactions
      • Compartment Input/Output
      • Parameters
      • Differential Equations
      • Solve Model
    • Visualize Model
    • Export
  • Multi-Compartmental Model
  • Parameter Estimation Tutorial
BioModME
  • Basic Tutorial
  • Constructing Model
  • Edit on GitHub

Constructing Model

This section will cover how to build and construct a model.

  • Define Variables
  • Create Reactions
    • Equation 1 - Law of Mass Action, Reversible
    • Equation 2 - Michaelis-Menton Kinetics
    • Equation 3 - Law of Mass Action, Unidirection
    • Equation 4 - Law of Mass Action, Unidirection
    • Equation 5 - Synthesis by Factor
    • Equation 6 - Degradation by Rate
  • Compartment Input/Output
  • Parameters
  • Differential Equations
  • Solve Model
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© Copyright 2023, Justin Womack. Revision 808712ed.

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